@inbook {277,
	title = {A Practical Guide to Molecular Dynamics Simulations of DNA Origami Systems},
	booktitle = {DNA Nanotechology: Methods and Protocols},
	series = {Methods in Molecular Biology},
	volume = {1811},
	year = {2018},
	pages = {209-229},
	publisher = {Humana Press},
	organization = {Humana Press},
	edition = {2},
	chapter = {A Practical Guide to Molecular Dynamics Simulations of DNA Origami Systems},
	address = {New York},
	abstract = {<p>The DNA origami method exploits the self-assembly property of nucleic acids to build diverse nanoscale systems. The all-atom molecular dynamics (MD) method has emerged as a powerful computational tool for atomic-resolution characterization of the in situ structure and physical properties of DNA origami objects. This chapter provides step-by-step instructions for building atomic-scale models of DNA origami systems, using the MD method to simulate the models, and performing basic analyses of the resulting MD trajectories.\&nbsp;</p>
},
	issn = {978-1-4939-8581-4},
	doi = {10.1007/978-1-4939-8582-1_15},
	url = {https://link.springer.com/protocol/10.1007/978-1-4939-8582-1_15},
	author = {Jejoong Yoo and Chen-Yu Li and Scott Michael Slone and Christopher Maffeo and Aleksei Aksimentiev},
	editor = {Giampaolo Zuccheri}
}
